内切酶PCR反应中的活性
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酶切反应条件如下:在20 µl PCR产物混合体系中加入5U的内切酶,按相应的反应温度温育1小时。通常20 µl PCR产物体系中含有1 µg底物DNA,1单位的Vent DNA聚合酶,1× ThermoPol Buffer [10 mM KCl, 20 mM Tris-HCl (PH 8.8@25°C),10 mM (NH4 )2 SO4 , 2 mM MgSO4和0.1% Triton X-100],以及终浓度为200 µM的dNTPs。表中标记有的内切酶在酶切反应前需加入NaCl(终浓度为100 mM)或相应的10× NEBuffer(1×终浓度)。
注意:在非最佳条件下进行酶切反应容易出现星号活性。要避免星号活性或希望取得更好的酶切效果,则需用乙醇沉淀纯化DNA,再将其溶解于相应的酶切缓冲液。此外,如果使用不纯的DNA聚合酶,会因其中混有其它核酸酶而影响整个反应结果。
+++表示完全切割;++表示约50%被完全切割;+表示约25%被完全切割。
酶 |
在反应物中的活性
|
---|---|
Aat II | + + + |
Acc I | + |
Acc65 I | + + |
Aci I | + + + |
Acl I | + + |
Afl II | + + + |
Afl III | + + |
Age I | + + + |
Ahd I | + + |
Alu I | + + + |
Alw I | + + |
AlwN I | + + |
Apa I | + ++ |
ApaL I | + + + |
Apo I | + + |
Asc I | + + + |
Ase I | + |
Ava I | + + + |
Ava II | + + |
Avr II | + + + |
Bae I | none |
BamH I | <center> + + +</center> |
Ban I | + + + |
Ban II | + + + |
Bbs I | + + + |
Bbv I | + + |
Bcg I | + + |
BciV I | + + |
Bcl I | + + + |
Bfa I | none |
Bgl I | + |
Bgl II | + + + |
Blp I | + + + |
Bmr I | <center> <font>+ + +</font></center> |
Bpm I | + + |
Bsa I | + |
BsaA I | + + + |
BsaB I | + + |
BsaH I | + + + |
BsaJ I | + + + |
BsaW I | + + |
BseR I | + + + |
Bsg I | + + |
BsiE I | + + |
BsiHKA I * | + + |
BsiW I | + + |
Bsl I | + + |
Bsm I | + + + |
BsmB I | + + |
BsmF I | + + |
BsoB I | + + + |
Bsp1286 I | + + + |
BspD I | + + |
BspE I * | + + + |
BspH I | + + |
BspM I | none |
Bsr I | + + + |
BsrB I | + + + |
BsrD I | + + |
BsrF I | + + |
BsrG I | + + |
BssH II | + + |
BssK I | + + |
BssS I | + + + |
BstB I | + + + |
BstE I | + + + |
BstN I | + + |
BstU I | + + |
BstX I | + + + |
BstY I | + + |
BstZ17 I | + + |
Bsu36 I | + + + |
Btg I | <center> <font>+ + +</font></center> |
Bts I | <center> <font>+ + +</font></center> |
Cac8 I | + + + |
Cla I | + + |
Dde I | + + + |
Dpn I | (none, requires methylated substrate) |
Dpn II | + + + |
Dra I | + + |
Dra III * | + + + |
Drd I | + + |
Eae I | + + + |
Eag I | + |
Ear I | + + + |
EcoN I | + + |
EcoO109 I | + + + |
EcoR I | + + |
EcoR V | + + + |
Fnu4H I | + + + |
Fok I | none |
Fse I | + + + |
Fsp I | + + |
Hae II | + + + |
Hae III | + + + |
Hga I | + + + |
Hha I | + + |
Hinc II | + + |
Hind III | + + + |
Hinf I | + + |
HinP1 I | + + + |
Hpa I | + + + |
Hpa II | + + + |
Hph I | + + + |
Kas I | + + + |
Kpn I | + + + |
Mbo I | + + |
Mbo II | + + + |
Mfe I | + + |
Mlu I | + + |
Mly I | <center> + + +</center> |
Mnl I | + + + |
Msc I | + + |
Mse I | + + |
Msl I | + + + |
Msp I | + + + |
MspA1 I | + + + |
Mwo I | + + |
Nae I | + |
Nar I | + + |
Nci I | + + |
Nco I | + + + |
Nde I | + + |
NgoM IV | + + |
Nhe I | + + |
Nla III | + + + |
Nla IV | + + + |
Not I | + + + |
Nru I | + + |
Nsi I | + + + |
Nsp I | <center> + + +</center> |
PaeR7 I | + + |
PflF I | + + |
PflM I | + + |
Ple I | + + |
Pme I | + + |
Pml I | + + |
PpuM I | + + |
PshA I | + + |
PspG I | <center> + +</center> |
Pst I | + + + |
Pvu I | + + |
Pvu II | + + + |
Rsa I | + + + |
Rsr II | + + |
Sac I | + + |
Sac II | + + + |
Sal I * | + |
Sap I | + + |
Sau3A I | + + + |
Sau96 I | + + |
Sca I | + + |
ScrF I | + + + |
SexA I | <center> <font>none</font></center> |
SfaN I | + + |
Sfc I | + + + |
Sfi I | + + + |
Sfo I | <center> <font>+ + +</font></center> |
SgrA I | <center> <font>+ + +</font></center> |
Sma I | + + |
Sml I | + + + |
SnaB I | + + |
Spe I | + + + |
Sph I | + + + |
Ssp I | + + |
Stu I | + + |
Sty I | + + |
Swa I | <center> + + +</center> |
Taq I | + + |
Tfi I | + + + |
Tli I | <center> + + +</center> |
Tse I | + + + |
Tsp45 I | + + + |
Tsp509 I | + + + |
TspR I | + + |
Tth111 I | + + |
Xba I | + + + |
Xcm I | + + + |
Xho I | + + |
Xma I | + + |
Xmn I | + + + |