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软件:Genome-wide Association Study Software

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The software included are listed bellow

 

IMPUTE a program for genotype imputation in genome-wide association studies and fine-mapping
studies based on a dense set of marker data (such as HapMap) [2 ,5 ]
v1.0.0
v2.1.0
19-07-2009
20-01-2010
SNPTEST a program for Frequentist and Bayesian tests of SNP association with binary (case-control)
and quantitative phenotypes that takes genotype uncertainty into account [2 ]
v2.1.0 20-03-2010
HAPGEN a program to simulate case control datasets at linked SNP markers conditional upon a set
of known haplotypes [4 ]
v1.3.0 17-01-2008
META a program to carryout meta-analysis of genetic studies. v1.0.0 12-10-2009
GENECLUSTER a program for location and detection of unobserved causal loci in fine-mapping experiments
and genome-wide association studies.
v1.0.0 19-03-2010
CHIAMO a genotype calling algorithm for multi-cohort studies [1 ] v0.2.1 22-10-2007
GTOOL a program for (a) generating subsets of genotype data, and (b) converting genotype data
between the PED file format and the FILE FORMAT used by SNPTEST and IMPUTE.
v0.6.0
 
07-07-2009

 

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