【求助】NCBI protein中各个条目的含义
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LOCUS DAA06302 180 aa linear ROD 26-SEP-2008
DEFINITION TPA_inf: major urinary protein 6 [Mus musculus].
ACCESSION DAA06302
VERSION DAA06302.1 GI:206725620
DBSOURCE accession BK006646.1
KEYWORDS Third Party Annotation; TPA; TPA:inferential.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
Sciurognathi; Muroidea; Muridae; Murinae; Mus.
REFERENCE 1 (residues 1 to 180)
AUTHORS Chamero,P., Marton,T.F., Logan,D.W., Flanagan,K., Cruz,J.R.,
Saghatelian,A., Cravatt,B.F. and Stowers,L.
TITLE Identification of protein pheromones that promote aggressive
behaviour
JOURNAL Nature 450 (7171), 899-902 (2007)
PUBMED 18064011
REFERENCE 2 (residues 1 to 180)
AUTHORS Logan,D.W., Marton,T.F. and Stowers,L.
TITLE Species specificity in major urinary proteins by parallel evolution
JOURNAL PLoS ONE 3 (9), E3280 (2008)
PUBMED 18815613
REMARK Publication Status: Online-Only
REFERENCE 3 (residues 1 to 180)
AUTHORS Logan,D.W., Marton,T.F. and Stowers,L.
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2008) Cell Biology, The Scripps Research
Institute, La Jolla, CA 92030, USA
COMMENT Method: conceptual translation supplied by author.
FEATURES Location/Qualifiers
source 1..180
/organism="Mus musculus"
/db_xref="taxon:10090"
Protein 1..180
/product="major urinary protein 6"
/note="Mup6"
Region 34..170
/region_name="Lipocalin"
/note="Lipocalin / cytosolic fatty-acid binding protein
family; cl01150"
/db_xref="CDD:141125"
CDS 1..180
/gene="Mup6"
/coded_by="join(BK006646.1:1..96,BK006646.1:435..568,
BK006646.1:1327..1400,BK006646.1:2038..2148,
BK006646.1:2489..2590,BK006646.1:2754..2779)"
ORIGIN
1 mkmllllclg ltlvcvhaee asstgrnfnv ekingewhti ilasdkreki edngnfrlfl
61 eqihvlensl vlkfhtvrde ecselsmvad ktekageysv tydgfntfti pktdydnflm
121 ahlinekdge tfqlmglygr epdlssdike rfaqlceehg ilreniidls nanrclqare
请问:region 34..170的内容是什么;region中region name、note、family和db_xref各代表什么意思呢?谢谢!
DEFINITION TPA_inf: major urinary protein 6 [Mus musculus].
ACCESSION DAA06302
VERSION DAA06302.1 GI:206725620
DBSOURCE accession BK006646.1
KEYWORDS Third Party Annotation; TPA; TPA:inferential.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia;
Sciurognathi; Muroidea; Muridae; Murinae; Mus.
REFERENCE 1 (residues 1 to 180)
AUTHORS Chamero,P., Marton,T.F., Logan,D.W., Flanagan,K., Cruz,J.R.,
Saghatelian,A., Cravatt,B.F. and Stowers,L.
TITLE Identification of protein pheromones that promote aggressive
behaviour
JOURNAL Nature 450 (7171), 899-902 (2007)
PUBMED 18064011
REFERENCE 2 (residues 1 to 180)
AUTHORS Logan,D.W., Marton,T.F. and Stowers,L.
TITLE Species specificity in major urinary proteins by parallel evolution
JOURNAL PLoS ONE 3 (9), E3280 (2008)
PUBMED 18815613
REMARK Publication Status: Online-Only
REFERENCE 3 (residues 1 to 180)
AUTHORS Logan,D.W., Marton,T.F. and Stowers,L.
TITLE Direct Submission
JOURNAL Submitted (13-JUN-2008) Cell Biology, The Scripps Research
Institute, La Jolla, CA 92030, USA
COMMENT Method: conceptual translation supplied by author.
FEATURES Location/Qualifiers
source 1..180
/organism="Mus musculus"
/db_xref="taxon:10090"
Protein 1..180
/product="major urinary protein 6"
/note="Mup6"
Region 34..170
/region_name="Lipocalin"
/note="Lipocalin / cytosolic fatty-acid binding protein
family; cl01150"
/db_xref="CDD:141125"
CDS 1..180
/gene="Mup6"
/coded_by="join(BK006646.1:1..96,BK006646.1:435..568,
BK006646.1:1327..1400,BK006646.1:2038..2148,
BK006646.1:2489..2590,BK006646.1:2754..2779)"
ORIGIN
1 mkmllllclg ltlvcvhaee asstgrnfnv ekingewhti ilasdkreki edngnfrlfl
61 eqihvlensl vlkfhtvrde ecselsmvad ktekageysv tydgfntfti pktdydnflm
121 ahlinekdge tfqlmglygr epdlssdike rfaqlceehg ilreniidls nanrclqare
请问:region 34..170的内容是什么;region中region name、note、family和db_xref各代表什么意思呢?谢谢!
你找的这个蛋白一共有180个氨基酸,所以:
region 34..170是指:第34-170个氨基酸;
region name:是指第34-170个氨基酸形成的结构域是“Lipocalin”
note:解释了这个结构域的全称;
family:应该是这个蛋白属于哪个家族蛋白吧。不是很清楚。
db_xref:这个不是很清楚。
region 34..170是指:第34-170个氨基酸;
region name:是指第34-170个氨基酸形成的结构域是“Lipocalin”
note:解释了这个结构域的全称;
family:应该是这个蛋白属于哪个家族蛋白吧。不是很清楚。
db_xref:这个不是很清楚。
/db_xref="CDD:141125" 应该是指和其他数据库的关联,CDD就是编码序列数据库。谢谢楼上2位
太感谢了!提供了一个很好的链接!
链接怎么打不开啊
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