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Generating and Analyzing Germ‐Free Mice

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  • Abstract
  • Table of Contents
  • Materials
  • Figures
  • Literature Cited

Abstract

 

The normal gut microbiota has evoked many investigators' interest over the years and the pioneering work of James Reyniers in the 1920s generated the first germ?free guinea pigs. Comparing the physiology between germ?free and conventionally raised animals has provided invaluable insights on how the gut microbiota affect host biology. Today we know that the gut microbiota modulate the immune system, epithelial cell proliferation, intestinal angiogenesis, hormone production, energy absorption, and behavior. Furthermore, recent data have demonstrated that obesity is associated with an altered gut microbiota, and a direct role for the microbiota in disease development was demonstrated by the use of germ?free mice. Here we are presenting protocols for maintaining and generating germ?free mice. Curr. Protoc. Mouse Biol. 2:307?316 © 2012 by John Wiley & Sons, Inc.

Keywords: gut microbiota; gnotobiotic mouse models; hysterectomy

     
 
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PDF or HTML at Wiley Online Library

Table of Contents

  • Introduction
  • Basic Protocol 1: Maintaining Germ‐Free Mice: Practical Considerations for Housing and Equipment Sterility
  • Basic Protocol 2: Assessing Germ‐Free Status by Fecal Bacteria Analysis
  • Alternate Protocol 1: Assessing Germ‐Free Status by Molecular Methods
  • Basic Protocol 3: Rederivation of Mice
  • Commentary
  • Literature Cited
  • Figures
     
 
GO TO THE FULL PROTOCOL:
PDF or HTML at Wiley Online Library

Materials

Basic Protocol 1: Maintaining Germ‐Free Mice: Practical Considerations for Housing and Equipment Sterility

  Materials
  • Clidox (sterilization agent)
  • Autoclavable Mouse Breeder Diet (Labdiets, cat. no. 5021)
  • Tap water
  • Bedding
  • Isolator including:
    • Isolator port
    • 12‐in. × 12‐in. × 18‐in. long transfer sleeve with two 1‐in. nipples (Class Biological Clean, cat. no. 2312180)
    • Stoppers for 1‐in. nipples
    • Blowers
  • Large tweezers
  • Shelving systems
  • Small paper autoclavable bags
  • 12‐in × 24‐in. Sterilizing cylinder (Class Biological Clean; see Fig. B)
  • Sterilization darts (Steris)
  • Mylar film
  • 3 M Scotch Brand Yellow Vinyl Tape
  • Mylar tape (Class Biological Clean)
  • Autoclave
  • Small trolley or equivalent

Basic Protocol 2: Assessing Germ‐Free Status by Fecal Bacteria Analysis

  Materials
  • Fecal pellets
  • Brain Heart broth or Sabouraud broth (for culture of possible fungi contaminations; e.g., Sigma) or nutrient broth (e.g., Sigma)
  • Microcentrifuge tubes
  • 14‐ml culture tubes
  • Anaerobic jar
  • Anaerocult A system (Merck)
  • 37°C incubator

Alternate Protocol 1: Assessing Germ‐Free Status by Molecular Methods

  Materials
  • Fecal pellets
  • NucleoSpin Soil kit for genomic DNA isolation (MACHEREY‐NAGEL) including:
    • Nucleospin Soil Bead tube
    • Lysis buffer SL2
    • Enhancer solution SX
    • Precipitation buffer SL3
    • Binding buffer SB
    • NucleoSpin Inhibitor Removal Column (red ring)
    • 2‐ml collection tubes
    • NucleoSpin Soil Column (green ring)
    • Washing buffer SW1
    • Washing buffer SW2
    • Elution buffer SE
  • Ice
  • Accuprime DNA Taq polymerase (Invitrogen)
  • Buffer I (provided with Taq polymerase)
  • Molecular biology‐grade water
  • Forward primer (8F; AGAGTTTGATCCTGGCTCAG)
  • Reverse primer (338R; TGCTGCCTCCCGTAGGAGT)
  • 1% agarose gel
  • Autoclaved microcentrifuge tubes
  • −20°C freezer
  • FastPrep:24 beadbeater (MP Biomedicals)
  • Vortex mixer
  • Centrifuge
  • 4°C incubator
  • PCR machine

Basic Protocol 3: Rederivation of Mice

  Materials
  • Germ‐free mice [Swiss Webster from Taconic or Charles River (C3H)]
  • Autoclaved water
  • Sterilization solution (1% chlorine)
  • Rederivation isolator with a small dunk tank (Class Biological Clean)
  • Sharp scissors
  • Tweezers
  • Cotton swabs (Q‐tips)
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PDF or HTML at Wiley Online Library

Figures

  •   Figure 1. Photos of 12‐week‐old germ‐free (left) and conventionally raised (right) Swiss Webster females.* denotes the cecum.
    View Image
  •   Figure 2. (A ) Isolator for housing germ‐free mice. (B ) Sterilizing cylinder.
    View Image
  •   Figure 3. Preparing food, bedding, and water for sterilization in cylinders. Individual cylinders should be used for each class of product and a Steris dart included in each cylinder to verify successful sterilization. Note: A = Mylar film over container to seal contents before loading into autoclave; B/C = single layer of Mylar tape (B) used to secure Mylar film (A), followed by three layers of vinyl tape (C) to ensure seal integrity. Also note that sterilization cylinders have been covered by filter paper ahead of time; this paper should suffice for at least 1 year, and is necessary to maintain sterility of contents, while permitting pressurized steam penetration. Contents not drawn to scale.
    View Image
  •   Figure 4. General process for importing autoclaved supplies into sterile isolator. (A ) [1] Autoclaved, cooled, sealed sterilization cylinder containing Steris dart (note indicator color change from yellow to black) and food/bedding/water; [2] transfer sleeve (note nipples—used for fumigation); [3] transfer port of isolator, still sealed on both outer and inner ends. (B ) [4] Sealed sterilization cylinder is attached to transfer sleeve and [5] sealed with three layers of vinyl tape (denoted by red stripe). (C ) [6] Outer end cover of isolator is removed and [7] connected to other end of transfer sleeve; [8] connection between transfer sleeve and transfer port also sealed with three layers of vinyl tape. (D ) [9] Fumigate interior of sleeve with Clidox (through sleeve nipples) and allow to stand for 1 hr. (E ) [10] Once fumigation is complete, remove inner isolator transfer port cover and [11] use sterile forceps to reach through the transfer port and sleeve to puncture the mylar film cover of the sterilization cylinder; [12] remove the autoclaved supplies from the cylinder (if desired, any contents within the isolator may be exported into the cylinder at this stage). (F ) [13] Reconnect the inner transfer port cap. (G ) [14] Disconnect the transfer sleeve from the isolator, [15] reconnect the outer transfer port cap (sterilize the transfer port with Clidox via outer cap nipples; outer cap nipples not shown in illustrations), and [16] disconnect the sterilization cylinder from transfer sleeve. Items not drawn to scale. NOTE: Outer and inner caps are secured using 18‐in rubber bands.
    View Image

Videos

Literature Cited

Literature Cited
   Bäckhed, F., Ley, R.E., Sonnenburg, J.L., Peterson, D.A., and Gordon, J.I. 2005. Host‐bacterial mutualism in the human intestine. Science 307:1915‐1920.
   Fossum, T.W. 2012. Small Animal Surgery, 4th ed. Elsevier Press, St. Louis, Mo.
   Smith, K., McCoy, K.D., and Macpherson, A.J. 2007. Use of axenic animals in studying the adaptation of mammals to their commensal intestinal microbiota. Semin. Immunol. 19:59‐69.
GO TO THE FULL PROTOCOL:
PDF or HTML at Wiley Online Library
 
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