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【共享】匹兹堡大学教程:DNA序列分析

丁香园论坛

1899
美国匹兹堡大学的DNA序列分析课程,包括引物设计、酶切等过程的生物信息学分析。

Data Analysis Tools
QuEST - ChIP-seq data analysis package
HOMER - Hypergeometric Optimization of Motif Enrichment -- ChIP-seq and Motif Discovery
Bowtie - An ultrafast memory-efficient short read aligner
Tophat - A spliced read mapper for RNA-Seq
Cufflinks - Transcript assembly, differential expression, and differential regulation for RNA-Seq
UCSC Genome BrowserEnsembl Genome BrowserCEAS - Cis Regulatory Element Annotation System - ChIP-chip peak data mining
Primer-BLAST - primer designing tool for qPCR and qRT-PCR
Recombineering - Bacterial Recombination System
DAVID - Database for Annotation, Visulatization and Integrated Discovery - Gene annotation
ConSite - Trascription factor binding site search
SOLiD Next Gen Sequencer
SOLiD Software Support
SEQanswers -- Forum for next gen sequencing users
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