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Preparation of High-Molecular-Weight DNA for Use in DNA Transfection : Secondary Transfections for Cloning Active Genes by Direct Phenotypic Selection

Calcium phosphate mediated transfection of genomic DNA samples into mammalian recipient cells can be used to isolate specific genes of interest. In theory, for any phenotype for which there is a suitable selection in cell culture, a gene sequence encoding that phenotype can be transferred a ...

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Statistical Methods Employed in Evaluation of Single-Locus Probe Results in Criminal Identity Cases

Evaluation of single-locus probe results in criminal-identity cases is best presented within the standard forensic framework for handling trace evidence. A comprehensive account was given by Aitken (1), and the language of that text will be used here. For simplicity, suppose a stain from the ...

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Interpretation and Statistical Evaluation of Multilocus DNA Fingerprints in Paternity and Relationship Testing

Since its discovery by Prof. Sir Alec Jeffreys FRS in 1984, DNA fingerprinting using multilocus VNTR probes (MLPs) has been widely used in the field of human identification (1,2). Although multilocus probes were used in forensic investigations in the late 1980s (3), forensic samples often yield ...

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Overview of PCR-Based Systems in Identity Testing

PCR-VNTRs are important markers for questions of identification, individualization, and discrimination. They already form an integral part of forensic DNA analysis. They can be subdivided into the systems of short tandem repeats (STR) with fragment lengths ranging between approx 1 ...

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Analysis of Amplified Fragment-Length Polymorphisms (VNTR/STR Loci) for Human Identity Testing

Highly polymorphic variable number tandem repeat (VNTR) loci have proven very useful for human DNA testing purposes (1-3). Initially, these variants were characterized by restriction fragment-length polymorphism (RFLP) analysis. Subsequently, the polymerase chain reacti ...

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An Introduction to PCR Primer Design and Optimization of Amplification Reactions

PCR optimization is usually performed in order to obtain maximum specificity and yield. In some applications for which the amount of template may be limiting, or when there is a large amount of nontarget sequences, the sensitivity is maximized. Nonoptimized conditions promote artifactu ...

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Amplification of Short Tandem Repeat Loci Using PCR

Short tandem repeat (STR) loci consist of repetitive elements of 3-7 nucleotides. The STR loci, which are numerous in the human genome, are highly polymorphic in length and may also vary in the sequences of the repetitive elements. The polymerase chain reaction (PCR) makes it possible to analyze ve ...

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17 Genotyping STR Loci Using an Automated DNA Sequencer

This introduction is intended to inform the forensic scientist of the historical development of STR typing on automated sequencers, as these precedents will have a bearing on the techniques and equipment used in the present-day laboratory. The section then concludes with a brief outline of ...

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Manual Electrophoretic Methods for Genotyping Amplified STR Loci

This chapter describes the manual typing of STR markers, detailing the electrophoretic techniques used to separate amplified products, and the relevant methods for their detection.

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19 Amplification and Sequencing of Mitochondrial DNA in Forensic Casework

Mitochondrial DNA (mtDNA) typing is increasingly used for the forensic identification of human remains (1-9). This is especially true when only limited quantities of sample are present, such as when the sample has undergone extensive degradation and nuclear-typing methods are ineffe ...

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Separation of PCR Fragments by Means of Direct Blotting Electrophoresis

For separation of alleles of PCR-dependent short tandem repeat (STR) polymorphisms, high resolution with the power to discriminate fragments differing by one base pair is often desired. Furthermore, sequencing reactions also require unambiguous one base-pair separation. For bo ...

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Recovery of High-Molecular-Weight DNA from Blood and Forensic Specimens

The isolation of genomic deoxyribonucleic acid (DNA) is a crucial step in the process of DNA profiling. The success of all subsequent genetic-typing procedures depends on the availability of sufficient amounts of highly purified DNA from biological crime stains as well as from reference b ...

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Transformation of Oats and Its Application to Improving Osmotic Stress Tolerance

Oat (Avena sativa L.), a worldwide temperate cereal crop, is deficient in tolerance to osmotic stress due to drought and/or salinity. To genetically transform the available commercial oat cultivars, a genotype-independent and efficient regeneration system from shoot apical merist ...

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Transgenic Wheat, Barley and Oats: Production and Characterization

Ever since the first developments in plant transformation technology using model plant species in the early 1980s, there has been a body of plant science research devoted to adapting these techniques to the transformation of crop plants. For some crop species progress was relatively rapid, ...

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Selection of Transformed Plants

The low frequency and randomness of transgene integration into host cells, combined with the significant challenges of recovering whole plants from those rare events, makes the use of selectable marker genes routine in plant transformation experiments. For research applications ...

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Biolistics Transformation of Wheat

We present a complete, step-by-step guide to the production of transformed wheat plants using a particle bombardment device to deliver plasmid DNA into immature embryos and the regeneration of transgenic plants via somatic embryogenesis. Currently, this is the most commonly used meth ...

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Reporter Genes

Reporter genes have been widely used in plant molecular biology, typically to discern patterns of gene expression, but also as markers of transformed cells during stable transformation procedures. The ideal marker gene would be expected to display characteristics such as ease and chea ...

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Transposon-Based Mutagenesis Generates Diverse Adeno-Associated Viral Libraries with Novel Gene Delivery Properties

The engineering of novel properties and functions into viral vectors for improved gene delivery remains a barrier to the development of efficient, customized gene delivery vehicles. Rational methods for designing improved viral vectors are often experimentally challenging and ...

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Photochemical Enhancement of DNA Delivery by EGF Receptor Targeted Polyplexes

Photochemical internalization (PCI) is a physico-chemical targeting method that enables light directed delivery of nucleic acids into cells. The technology is based on photosensitizers that localize in the membranes of endocytic vesicles. A light activation of the photosensit ...

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Reducing the Genotoxic Potential of Retroviral Vectors

The recent development of leukemia in gene therapy patients with X-linked severe combined immunodeficiency disease because of retroviral vector insertional mutagenesis has prompted reassessment of the genotoxic potential of integrating vector systems. In this chapter, va ...

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