low frequency table

互联网2013-09-05

1316

low frequency table

Codon usage for C. elegans lowly biased (lowly expressed, by inference) genes. (Stenico, M., Lloyd, A. T., and Sharp, P. M. (1994). Nucleic Acids Research 22: 2437-2246

AmAcid	Codon	Number	/1000	Fraction
Gly	GGG	32	4.34	0.09
Gly	GGA	207	28.05	0.57
Gly	GGT	96	13.01	0.26
Gly	GGC	28	3.79	0.08
Glu	GAG	140	18.97	0.26
Glu	GAA	393	53.26	0.74
Asp	GAT	341	46.21	0.76
Asp	GAC	106	14.37	0.24
Val	GTG	72	9.76	0.16
Val	GTA	101	13.69	0.23
Val	GTT	201	27.24	0.46
Val	GTC	67	9.08	0.15
Ala	GCG	58	7.86	0.15
Ala	GCA	179	24.26	0.46
Ala	GCT	106	14.37	0.27
Ala	GCC	48	6.5	0.12
Arg	AGG	31	4.2	0.07
Arg	AGA	132	17.89	0.29
Ser	AGT	111	15.04	0.2
Ser	AGC	46	6.23	0.08
Lys	AAG	127	17.21	0.3
Lys	AAA	297	40.25	0.7
Asn	AAT	258	34.96	0.73
Asn	AAC	97	13.15	0.27
Met	ATG	237	32.12	1
Ile	ATA	79	10.71	0.18
Ile	ATT	265	35.91	0.6
Ile	ATC	99	13.42	0.22
Thr	ACG	86	11.65	0.21
Thr	ACA	171	23.17	0.42
Thr	ACT	111	15.04	0.28
Thr	ACC	35	4.74	0.09
Trp	TGG	86	11.65	1
End	TGA	6	0.81	0.4
Cys	TGT	104	14.09	0.64
Cys	TGC	58	7.86	0.36
End	TAG	2	0.27	0.13
End	TAA	7	0.95	0.47
Tyr	TAT	157	21.28	0.69
Tyr	TAC	70	9.49	0.31
Leu	TTG	139	18.84	0.22
Leu	TTA	111	15.04	0.17
Phe	TTT	172	23.31	0.53
Phe	TTC	153	20.73	0.47
Ser	TCG	61	8.27	0.11
Ser	TCA	178	24.12	0.31
Ser	TCT	118	15.99	0.21
Ser	TCC	52	7.05	0.09
Arg	CGG	39	5.29	0.09
Arg	CGA	169	22.9	0.37
Arg	CGT	77	10.44	0.17
Arg	CGC	9	1.22	0.02
Gln	CAG	87	11.79	0.25
Gln	CAA	256	34.69	0.75
His	CAT	121	16.4	0.65
His	CAC	65	8.81	0.35
Leu	CTG	85	11.52	0.13
Leu	CTA	73	9.89	0.11
Leu	CTT	156	21.14	0.24
Leu	CTC	77	10.44	0.12
Pro	CCG	58	7.86	0.17
Pro	CCA	165	22.36	0.49
Pro	CCT	81	10.98	0.24
Pro	CCC	30	4.07	0.09

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