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low frequency table

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low frequency table

Codon usage for C. elegans lowly biased (lowly expressed, by inference) genes. (Stenico, M., Lloyd, A. T., and Sharp, P. M. (1994). Nucleic Acids Research 22: 2437-2246

 

 

AmAcid Codon Number /1000 Fraction
Gly GGG 32 4.34 0.09
Gly GGA 207 28.05 0.57
Gly GGT 96 13.01 0.26
Gly GGC 28 3.79 0.08
Glu GAG 140 18.97 0.26
Glu GAA 393 53.26 0.74
Asp GAT 341 46.21 0.76
Asp GAC 106 14.37 0.24
Val GTG 72 9.76 0.16
Val GTA 101 13.69 0.23
Val GTT 201 27.24 0.46
Val GTC 67 9.08 0.15
Ala GCG 58 7.86 0.15
Ala GCA 179 24.26 0.46
Ala GCT 106 14.37 0.27
Ala GCC 48 6.5 0.12
Arg AGG 31 4.2 0.07
Arg AGA 132 17.89 0.29
Ser AGT 111 15.04 0.2
Ser AGC 46 6.23 0.08
Lys AAG 127 17.21 0.3
Lys AAA 297 40.25 0.7
Asn AAT 258 34.96 0.73
Asn AAC 97 13.15 0.27
Met ATG 237 32.12 1
Ile ATA 79 10.71 0.18
Ile ATT 265 35.91 0.6
Ile ATC 99 13.42 0.22
Thr ACG 86 11.65 0.21
Thr ACA 171 23.17 0.42
Thr ACT 111 15.04 0.28
Thr ACC 35 4.74 0.09
Trp TGG 86 11.65 1
End TGA 6 0.81 0.4
Cys TGT 104 14.09 0.64
Cys TGC 58 7.86 0.36
End TAG 2 0.27 0.13
End TAA 7 0.95 0.47
Tyr TAT 157 21.28 0.69
Tyr TAC 70 9.49 0.31
Leu TTG 139 18.84 0.22
Leu TTA 111 15.04 0.17
Phe TTT 172 23.31 0.53
Phe TTC 153 20.73 0.47
Ser TCG 61 8.27 0.11
Ser TCA 178 24.12 0.31
Ser TCT 118 15.99 0.21
Ser TCC 52 7.05 0.09
Arg CGG 39 5.29 0.09
Arg CGA 169 22.9 0.37
Arg CGT 77 10.44 0.17
Arg CGC 9 1.22 0.02
Gln CAG 87 11.79 0.25
Gln CAA 256 34.69 0.75
His CAT 121 16.4 0.65
His CAC 65 8.81 0.35
Leu CTG 85 11.52 0.13
Leu CTA 73 9.89 0.11
Leu CTT 156 21.14 0.24
Leu CTC 77 10.44 0.12
Pro CCG 58 7.86 0.17
Pro CCA 165 22.36 0.49
Pro CCT 81 10.98 0.24
Pro CCC 30 4.07 0.09

 

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